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Natalie Elphick 2024-03-05 12:31:56 -08:00
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4 changed files with 15 additions and 15 deletions
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12
docs/Intro_to_Unix_Part_1.html
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@ -1894,8 +1894,8 @@ document.addEventListener('DOMContentLoaded', function(e) {
<p><strong>Natalie Elphick</strong><br />
Bioinformatician I</p>
<p><br></p>
<p><strong>Yihang Xin (TA)</strong><br />
Software Engineer II</p>
<p><strong>Ayushi Agrawal (TA)</strong><br />
Bioinformatician III</p>
</section>
<section>
<section id="the-unix-command-line" class="title-slide slide level1">
@ -2348,8 +2348,8 @@ size)</li>
</ul>
<pre class="text"><code>ls -lah part_1</code></pre>
<pre><code>total 8
drwx---rw-@ 4 nelphick staff 128B Mar 4 12:23 .
drwxr-xr-x@ 5 nelphick staff 160B Mar 4 12:33 ..
drwx---rw-@ 4 nelphick staff 128B Mar 4 12:59 .
drwxr-xr-x@ 5 nelphick staff 160B Mar 4 12:59 ..
-rw-r--r--@ 1 nelphick staff 0B Apr 11 2023 .hidden_file.txt
-rw-r--r--@ 1 nelphick staff 60B Apr 12 2023 list_numbers.tsv</code></pre>
</section>
@ -2362,8 +2362,8 @@ ls -l</code></pre>
<pre><code>cd ..
ls -l</code></pre>
<pre><code>total 0
drwx---rw-@ 4 nelphick staff 128 Mar 4 12:23 part_1
drwxr-xr-x@ 3 nelphick staff 96 Mar 4 12:39 part_2</code></pre>
drwx---rw-@ 4 nelphick staff 128 Mar 4 12:59 part_1
drwxr-xr-x@ 3 nelphick staff 96 Mar 4 12:59 part_2</code></pre>
</section></section>
<section>
<section id="creating-and-altering-files" class="title-slide slide level1">

12
docs/Intro_to_Unix_Part_2.html
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@ -1895,7 +1895,7 @@ document.addEventListener('DOMContentLoaded', function(e) {
Bioinformatician I</p>
<p><br></p>
<p><strong>Yihang Xin (TA)</strong><br />
Software Engineer II</p>
Software Engineer III</p>
<p><br></p>
</section>
<section id="setup" class="title-slide slide level1">
@ -1961,9 +1961,9 @@ compressed archive files</li>
<pre class="text"><code>tar -czf part_1.tar.gz part_1
ls -l</code></pre>
<pre><code>total 8
drwx---rw-@ 4 nelphick staff 128 Mar 4 12:23 part_1
-rw-r--r-- 1 nelphick staff 821 Mar 4 12:32 part_1.tar.gz
drwxr-xr-x@ 3 nelphick staff 96 Mar 4 12:32 part_2</code></pre>
drwx---rw-@ 4 nelphick staff 128 Mar 5 12:20 part_1
-rw-r--r-- 1 nelphick staff 801 Mar 5 12:24 part_1.tar.gz
drwxr-xr-x@ 4 nelphick staff 128 Mar 5 12:24 part_2</code></pre>
<ul>
<li>-c: create a new archive</li>
<li>-f: specify the name of the archive file</li>
@ -2106,13 +2106,13 @@ interpreter is</li>
<li>By default, files are not executable</li>
</ul>
<pre class="text"><code>ls -l part_2/example_script.sh</code></pre>
<pre><code>-rw-r--r-- 1 nelphick staff 287 Mar 4 12:32 part_2/example_script.sh</code></pre>
<pre><code>-rw-r--r-- 1 nelphick staff 287 Mar 5 12:24 part_2/example_script.sh</code></pre>
<ul>
<li>We can set the execute bit like this</li>
</ul>
<pre class="text"><code>chmod u+x part_2/example_script.sh
ls -l part_2/example_script.sh</code></pre>
<pre><code>-rwxr--r-- 1 nelphick staff 287 Mar 4 12:32 part_2/example_script.sh</code></pre>
<pre><code>-rwxr--r-- 1 nelphick staff 287 Mar 5 12:24 part_2/example_script.sh</code></pre>
</section>
<section id="example" class="slide level2">
<h2>Example</h2>

4
intro-unix-command-line/Intro_to_Unix_Part_1.Rmd
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@ -32,8 +32,8 @@ Bioinformatician I
<br>
**Yihang Xin (TA)**
Software Engineer II
**Ayushi Agrawal (TA)**
Bioinformatician III
# The Unix Command-line

2
intro-unix-command-line/Intro_to_Unix_Part_2.Rmd
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@ -30,7 +30,7 @@ Bioinformatician I
**Yihang Xin (TA)**
Software Engineer II
Software Engineer III
<br>