Buck9195/Gladstone-Bioinformatics-Workshop
1
0
Fork 0
mirror of https://github.com/gladstone-institutes/Bioinformatics-Workshops.git synced 2025-11-30 09:45:43 -08:00
Code Issues Projects Releases Packages Wiki Activity Actions

update for Jan 2025

Browse source
This commit is contained in:
Natalie Elphick 2025-01-24 12:32:34 -08:00
parent 98e1c6b026
commit 03f07124d1
5 changed files with 60 additions and 355 deletions
Download patch file Download diff file Expand all files Collapse all files

23
intro-r-data-analysis/Intro_to_R_data_analysis_part_1.Rmd
View file

@ -2,7 +2,7 @@
title: "Introduction to R Data Analysis"
subtitle: "Part 1"
author: "Natalie Elphick"
date: "November 11th, 2024"
date: "January 27th, 2025"
knit: (function(input, ...) {
rmarkdown::render(
input,
@ -27,8 +27,10 @@ knitr::opts_chunk$set(comment = "")
## Introductions
**Natalie Elphick**
Bioinformatician I
Bioinformatician II
**Michela Traglia**
Senior Statistician
@ -464,7 +466,7 @@ packages
## Why use Tidyverse Packages?
- Most of the work in data analysis is getting data into the correct format to create outputs
- Most of the work in data analysis is getting data into the correct format to create outputs (plots and tables)
- The tidyverse collection of packages simplifies this process
- Intuitive syntax
- Comprehensive (data manipulation, cleaning, modeling and graphics)
@ -475,19 +477,18 @@ packages
# End of Part 1
## Workshop survey
- Please fill out our [workshop survey](https://www.surveymonkey.com/r/F75J6VZ) so we can continue to improve these workshops
- Please fill out our [workshop survey](https://www.surveymonkey.com/r/bioinfo-training) so we can continue to improve these workshops
## Upcoming Workshops
[Introduction to scATAC-seq Data Analysis](https://gladstone.org/events/introduction-scatac-seq-data-analysis)
November 14 - November 15, 2024 1:00-4:00pm PST
[Introduction to Unix Command Line](https://gladstone.org/events/introduction-unix-command-line-2)
February 10-February 11, 2025 1:00-3:00pm PST
[Introduction to Linear Mixed Effects Models](https://gladstone.org/events/introduction-linear-mixed-effects-models-0)
November 18-November 19, 2024 1:00-3:00pm PST
[scATAC-seq and scRNA-seq Data Integration](https://gladstone.org/events/scatac-seq-and-scrna-seq-data-integration)
November 22, 2024 1:00-4:00pm PST
[Introduction to RNA-Seq Analysis](https://gladstone.org/events/introduction-rna-seq-analysis-8)
February 13-February 14, 2025 1:00-4:00pm PST
[Intermediate RNA-Seq Analysis Using R](https://gladstone.org/events/intermediate-rna-seq-analysis-using-r-6)
February 20, 2025 9:00am-12:00pm PST
- Check [this link](https://gladstone.org/events?series=data-science-training-program) at for the full schedule

23
intro-r-data-analysis/Intro_to_R_data_analysis_part_2.Rmd
View file

@ -2,7 +2,7 @@
title: "Introduction to R Data Analysis"
subtitle: "Part 2"
author: "Natalie Elphick"
date: "November 12th, 2024"
date: "January 28th, 2025"
knit: (function(input, ...) {
rmarkdown::render(
input,
@ -29,7 +29,7 @@ knitr::opts_chunk$set(comment = "")
# Introductions
**Natalie Elphick**
Bioinformatician I
Bioinformatician II
**Min-Gyoung Shin**
Bioinformatician III
@ -282,10 +282,11 @@ For any bioinformatics specific questions feel free to reach out to the Gladston
Code templates can be used to avoid typing the same code over and over again.
- These are templates that we are using to automate things like plot appearance and documentation:
- These are templates can be used to automate things like plot appearance and documentation:
- [.Rmd Template](https://www.dropbox.com/scl/fi/a9cnyqdajgabbfcxbmm6y/RMD_template.Rmd?rlkey=yntfpo6aptw9b4pgjyzpe5ubi&dl=1)
- [.R Script Template](https://www.dropbox.com/scl/fi/cy43b8b1x3nzn17esnmmt/Rscript_template.R?rlkey=zn7b0g8nn0s9213blh70fjjsx&dl=1)
- Customize these for your use case to save time
## R Resources
@ -301,21 +302,21 @@ Code templates can be used to avoid typing the same code over and over again.
# End of Part 2
## Workshop survey
- Please fill out our [workshop survey](https://www.surveymonkey.com/r/F75J6VZ) so we can continue to improve these workshops
- Please fill out our [workshop survey](https://www.surveymonkey.com/r/bioinfo-training) so we can continue to improve these workshops
## Upcoming Workshops
[Introduction to scATAC-seq Data Analysis](https://gladstone.org/events/introduction-scatac-seq-data-analysis)
November 14 - November 15, 2024 1:00-4:00pm PST
[Introduction to Unix Command Line](https://gladstone.org/events/introduction-unix-command-line-2)
February 10-February 11, 2025 1:00-3:00pm PST
[Introduction to Linear Mixed Effects Models](https://gladstone.org/events/introduction-linear-mixed-effects-models-0)
November 18-November 19, 2024 1:00-3:00pm PST
[scATAC-seq and scRNA-seq Data Integration](https://gladstone.org/events/scatac-seq-and-scrna-seq-data-integration)
November 22, 2024 1:00-4:00pm PST
[Introduction to RNA-Seq Analysis](https://gladstone.org/events/introduction-rna-seq-analysis-8)
February 13-February 14, 2025 1:00-4:00pm PST
[Intermediate RNA-Seq Analysis Using R](https://gladstone.org/events/intermediate-rna-seq-analysis-using-r-6)
February 20, 2025 9:00am-12:00pm PST
- Check [this link](https://gladstone.org/events?series=data-science-training-program) at for the full schedule

1
intro-r-data-analysis/intro-r-data-analysis.Rproj
View file

@ -1,4 +1,5 @@
Version: 1.0
ProjectId: 36e3c0a4-0d16-4039-b4e3-a68991d533c3
RestoreWorkspace: Default
SaveWorkspace: Default