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fix typo and missing line in samtools installation instructions

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Natalie Elphick 2024-04-15 14:50:14 -07:00
parent b23d5dd65f
commit 094d41cd0d
2 changed files with 4 additions and 2 deletions
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3
docs/Working_on_Wynton_Part_1.html
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@ -672,7 +672,7 @@ application</li>
Cluster</a></li>
</ul>
<p><u>Names</u>:</p>
<p>log1, log2 and plog (for PHI users)</p>
<p>log1, log2 and plog1 (for PHI users)</p>
</section>
<section id="login" class="slide level2 small-bullets">
<h2 class="small-bullets">Login</h2>
@ -1015,6 +1015,7 @@ from source</a></li>
<li>Create install location and configure</li>
</ol>
<pre><code>[alice@dev1 ~]$ mkdir -p $HOME/software/samtools-1.14
[alice@dev1 ~]$ cd samtools-1.19.2
[alice@dev1 ~]$ ./configure --prefix=$HOME/software/samtools-1.14</code></pre>
<ol start="3" type="1">
<li>Build and install</li>

3
working-on-wynton-hpc/Working_on_Wynton_Part_1.Rmd
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@ -88,7 +88,7 @@ TAs:
<u>Names</u>:
log1, log2 and plog (for PHI users)
log1, log2 and plog1 (for PHI users)
## Login {.small-bullets}
@ -335,6 +335,7 @@ echo '[alice@dev1 ~]$ mkdir -p "/scratch/$USER"
```{r, engine='bash', eval=TRUE, results='markup',comment=NA, highlight=TRUE, echo=FALSE}
echo '[alice@dev1 ~]$ mkdir -p $HOME/software/samtools-1.14'
echo '[alice@dev1 ~]$ cd samtools-1.19.2'
echo '[alice@dev1 ~]$ ./configure --prefix=$HOME/software/samtools-1.14'
```