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Merge branch 'master' of github.com:gladstone-institutes/Bioinformatics-Workshops

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Alexander Pico 2020-10-11 18:23:55 -07:00
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intermediate-pathway-scripting/README.md
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[Link to wiki page](https://github.com/gladstone-institutes/Bioinformatics-Workshops/wiki/Introduction-to-Pathway-Analysis-Using-R)
### Description of files
* Preworkshop-instructions.R should be run prior to the workshop
* CSV files are example subsets and pathway enrichment results; these are not required for the workshop

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intermediate-pathway-scripting/preworkshop_installations.R
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## Run this R script prior to the workshop. You can open it in RStudio and click "Source".
## These pacakges require R version 3.6.0 or later. Check by typing: R.version.string
##
## Open this script in RStudio and step through it line-by-line, reading the comments as you go.
##
## Please confirm the "Success" message prior to attending the workshop. If the script produced an "Error"
@ -22,7 +19,6 @@ load.libs <- c(
"clusterProfiler",
"dplyr",
"tidyr",
"ggplot2",
"stringr",
"RColorBrewer",
"rWikiPathways",
@ -63,4 +59,4 @@ cytoscapePing()
# Then run these lines to install a few apps in Cytoscape
installApp('WikiPathways')
installApp('CyTargetLinker')
installApp('stringApp')
installApp('stringApp')