From 2eaaca919ecd216a128d670f3e23f95150b12db9 Mon Sep 17 00:00:00 2001 From: Natalie Elphick Date: Sun, 23 Mar 2025 17:20:14 -0700 Subject: [PATCH] update for March 2025 --- docs/Working_on_Wynton_Part_1.html | 31 +++++++++++-------- docs/Working_on_Wynton_Part_2.html | 27 +++++++++------- .../Working_on_Wynton_Part_1.Rmd | 28 ++++++++++------- .../Working_on_Wynton_Part_2.Rmd | 27 +++++++++------- .../working-on-wynton-hpc.Rproj | 1 + 5 files changed, 66 insertions(+), 48 deletions(-) diff --git a/docs/Working_on_Wynton_Part_1.html b/docs/Working_on_Wynton_Part_1.html index 580573f..afd3fef 100644 --- a/docs/Working_on_Wynton_Part_1.html +++ b/docs/Working_on_Wynton_Part_1.html @@ -574,7 +574,7 @@ document.addEventListener('DOMContentLoaded', function(e) {

Working on Wynton

Part 1

Natalie Elphick

-

December 5th, 2024

+

March 24th, 2025

@@ -587,12 +587,7 @@ document.addEventListener('DOMContentLoaded', function(e) {

Introductions

Instructor:

      Natalie Elphick
-      Bioinformatician I

-

TAs:

-

      Alex Pico
-      Bioinformatics Core Director
-      Michela Traglia
-      Senior Statistician

+      Bioinformatician II

Target Audience

@@ -645,8 +640,8 @@ research groups

https://wynton.ucsf.edu

-
-

Node Types and Logging in

+
+

Node Types & Logging in

@@ -1094,14 +1089,24 @@ run:

Thank You!

+

https://www.surveymonkey.com/r/bioinfo-training

Upcoming Data Science Training Program Workshops

-

This is our last workshop for 2024, please check the link below for -future workshop dates.

+

Single +Cell RNA-Seq Analysis
+March 27-March 28, 2025 9:00-12:00pm PDT

+

Introduction +to Linear Mixed Effects Models
+April 3-April 4, 2025 1:00-3:00pm PDT

+

Introduction +to scATAC-seq Data Analysis
+April 17-April 18, 2025 9:00am-12:00pm PDT

+

Introduction +to Pathway Analysis
+April 22, 2025 1:00-4:00pm PDT

Complete Schedule

diff --git a/docs/Working_on_Wynton_Part_2.html b/docs/Working_on_Wynton_Part_2.html index 4022ae4..d630356 100644 --- a/docs/Working_on_Wynton_Part_2.html +++ b/docs/Working_on_Wynton_Part_2.html @@ -637,7 +637,7 @@ document.addEventListener('DOMContentLoaded', function(e) {

Working on Wynton

Part 2

Natalie Elphick

-

December 6th, 2024

+

March 25th, 2025

@@ -650,12 +650,7 @@ document.addEventListener('DOMContentLoaded', function(e) {

Introductions

Instructor:

      Natalie Elphick
-      Bioinformatician I

-

TAs:

-

      Alex Pico
-      Bioinformatics Core Director
-      Michela Traglia
-      Senior Statistician

+      Bioinformatician II

Target Audience

@@ -1303,14 +1298,24 @@ list retrieval and install commands together

Thank You!

+

https://www.surveymonkey.com/r/bioinfo-training

Upcoming Data Science Training Program Workshops

-

This is our last workshop for 2024, please check the link below for -future workshop dates.

+

Single +Cell RNA-Seq Analysis
+March 27-March 28, 2025 9:00-12:00pm PDT

+

Introduction +to Linear Mixed Effects Models
+April 3-April 4, 2025 1:00-3:00pm PDT

+

Introduction +to scATAC-seq Data Analysis
+April 17-April 18, 2025 9:00am-12:00pm PDT

+

Introduction +to Pathway Analysis
+April 22, 2025 1:00-4:00pm PDT

Complete Schedule

diff --git a/working-on-wynton-hpc/Working_on_Wynton_Part_1.Rmd b/working-on-wynton-hpc/Working_on_Wynton_Part_1.Rmd index 1f42d25..127b63a 100644 --- a/working-on-wynton-hpc/Working_on_Wynton_Part_1.Rmd +++ b/working-on-wynton-hpc/Working_on_Wynton_Part_1.Rmd @@ -2,7 +2,7 @@ title: "Working on Wynton" subtitle: "Part 1" author: "Natalie Elphick" -date: "December 5th, 2024" +date: "March 24th, 2025" knit: (function(input, ...) { rmarkdown::render( input, @@ -28,16 +28,9 @@ knitr::opts_chunk$set(comment = "") Instructor:       **Natalie Elphick** -      *Bioinformatician I* +      *Bioinformatician II* -TAs: - -      **Alex Pico** -      *Bioinformatics Core Director* -      **Michela Traglia** -      *Senior Statistician* - ## Target Audience - Prior experience with UNIX command-line @@ -75,7 +68,7 @@ TAs: -# Node Types and Logging in +# Node Types & Logging in ## Node Types {.small-bullets} @@ -429,10 +422,21 @@ echo '[alice@dev1 ~]$ apptainer exec hello-world_1.0.sif cat /Dockerfile' ## Thank You! - Please take some time to fill out the workshop survey if you are not attending part 2: - + + ## Upcoming Data Science Training Program Workshops -This is our last workshop for 2024, please check the link below for future workshop dates. +[Single Cell RNA-Seq Analysis](https://gladstone.org/index.php/events/single-cell-rna-seq-analysis-5) +March 27-March 28, 2025 9:00-12:00pm PDT + +[Introduction to Linear Mixed Effects Models](https://gladstone.org/index.php/events/introduction-linear-mixed-effects-models-1) +April 3-April 4, 2025 1:00-3:00pm PDT + +[Introduction to scATAC-seq Data Analysis](https://gladstone.org/index.php/events/introduction-scatac-seq-data-analysis-0) +April 17-April 18, 2025 9:00am-12:00pm PDT + +[Introduction to Pathway Analysis](https://gladstone.org/index.php/events/introduction-pathway-analysis-3) +April 22, 2025 1:00-4:00pm PDT [Complete Schedule](https://gladstone.org/events?series=189) diff --git a/working-on-wynton-hpc/Working_on_Wynton_Part_2.Rmd b/working-on-wynton-hpc/Working_on_Wynton_Part_2.Rmd index 411c1b7..95ffc19 100644 --- a/working-on-wynton-hpc/Working_on_Wynton_Part_2.Rmd +++ b/working-on-wynton-hpc/Working_on_Wynton_Part_2.Rmd @@ -2,7 +2,7 @@ title: "Working on Wynton" subtitle: "Part 2" author: "Natalie Elphick" -date: "December 6th, 2024" +date: "March 25th, 2025" knit: (function(input, ...) { rmarkdown::render( input, @@ -28,16 +28,9 @@ knitr::opts_chunk$set(comment = "") Instructor:       **Natalie Elphick** -      *Bioinformatician I* +      *Bioinformatician II* -TAs: - -      **Alex Pico** -      *Bioinformatics Core Director* -      **Michela Traglia** -      *Senior Statistician* - ## Target Audience - Prior experience with UNIX command-line @@ -491,14 +484,24 @@ echo "[alice@dev1 ~]$ apptainer pull docker://docker_hub_user/seurat-harmony:1.0 - Please take some time to fill out the workshop survey: - + + ## Upcoming Data Science Training Program Workshops -This is our last workshop for 2024, please check the link below for future workshop dates. +[Single Cell RNA-Seq Analysis](https://gladstone.org/index.php/events/single-cell-rna-seq-analysis-5) +March 27-March 28, 2025 9:00-12:00pm PDT + +[Introduction to Linear Mixed Effects Models](https://gladstone.org/index.php/events/introduction-linear-mixed-effects-models-1) +April 3-April 4, 2025 1:00-3:00pm PDT + +[Introduction to scATAC-seq Data Analysis](https://gladstone.org/index.php/events/introduction-scatac-seq-data-analysis-0) +April 17-April 18, 2025 9:00am-12:00pm PDT + +[Introduction to Pathway Analysis](https://gladstone.org/index.php/events/introduction-pathway-analysis-3) +April 22, 2025 1:00-4:00pm PDT [Complete Schedule](https://gladstone.org/events?series=189) - diff --git a/working-on-wynton-hpc/working-on-wynton-hpc.Rproj b/working-on-wynton-hpc/working-on-wynton-hpc.Rproj index 8e3c2eb..a2e98bb 100644 --- a/working-on-wynton-hpc/working-on-wynton-hpc.Rproj +++ b/working-on-wynton-hpc/working-on-wynton-hpc.Rproj @@ -1,4 +1,5 @@ Version: 1.0 +ProjectId: 34071a3d-003e-4263-bd00-68a4cf53c544 RestoreWorkspace: Default SaveWorkspace: Default