From 4748ec22b8ae1a919752f2153fd1b22c304cfe6e Mon Sep 17 00:00:00 2001 From: Natalie Elphick <85529875+natalie-23-gill@users.noreply.github.com> Date: Wed, 8 Feb 2023 19:03:37 -0800 Subject: [PATCH] add instructions for getting the data on wynton --- intro-sc-atac-seq/wynton_launch_instructions.txt | 9 +++++++++ 1 file changed, 9 insertions(+) diff --git a/intro-sc-atac-seq/wynton_launch_instructions.txt b/intro-sc-atac-seq/wynton_launch_instructions.txt index fb8a75c..d92b043 100644 --- a/intro-sc-atac-seq/wynton_launch_instructions.txt +++ b/intro-sc-atac-seq/wynton_launch_instructions.txt @@ -16,6 +16,15 @@ singularity pull docker://ruben6um/scatac_workshop_demo_2 dataDir=/gladstone/bioinformatics/projects/scatac_workshop/ export APPTAINER_BINDPATH="$dataDir" +##get the workshop data +wget https://www.dropbox.com/s/4d4heooz0u9p721/hands-on.zip + +##unzip workshop data +unzip hands-on.zip + +##move to the workshop directory +cd hands-on + ##launch the container singularity exec $dataDir/scatac_workshop_demo_2_latest.sif R