diff --git a/intro-rna-seq/README.md b/intro-rna-seq/README.md index fa8856d..448add3 100644 --- a/intro-rna-seq/README.md +++ b/intro-rna-seq/README.md @@ -1,4 +1,13 @@ # intro-rna-seq [Link to wiki page](https://github.com/gladstone-institutes/Bioinformatics-Workshops/wiki/Introduction-to-RNA-Seq-Analysis) -### Description of files \ No newline at end of file +### Description of files +1. Single_read.fastq (fastq file with a single read to understand the fastq file format) +2. Bacteria_GATTACA_L001_R1_001.fastq (single-end small practice data with 100k reads for the demo in the workshop) +3. Adapter_Sequence.fasta (fasta file with adapter sequence for demo with cutadapt) +4. rDNA_sequence.fasta (fasta file with the reference genome sequence for demo with STAR aligner) +5. rDNA.gtf (GTF file with the annotations for demo with featureCounts) +6. all_steps_wynton.sh (shell script for running all the analysis steps on UCSF Wynton command-line interface using the practice data provided) +7. steps_on_wynton_session1.txt (text file with steps used on wynton to download/uplaod files, change directories etc in session 1) +8. steps_on_wynton_session2.txt (text file with steps used on wynton to download/uplaod files, change directories etc in session 2) +9. all_steps_docker_desktop.sh (shell script for running all the analysis steps using Docker Desktop and the practice data provided)