diff --git a/docs/Intro_to_R_data_analysis_part_2.html b/docs/Intro_to_R_data_analysis_part_2.html index 7e38e57..a557125 100644 --- a/docs/Intro_to_R_data_analysis_part_2.html +++ b/docs/Intro_to_R_data_analysis_part_2.html @@ -2809,7 +2809,7 @@ border: 0;

Introductions

Natalie Elphick
Bioinformatician I

-

Michela Traglia (In Person TA)
+

Michela Traglia (Online TA)
Senior Statistician

Yihang Xin (Online TA)
Software Engineer III

@@ -2822,6 +2822,8 @@ Software Engineer III

  • Filtering and reformatting data
  • Plotting data
  • Hands on data analysis
  • +
  • ChatGPT tips for R
  • +
  • Where to get help
  • @@ -3046,7 +3048,7 @@ modified by adding layers

    10 min break

    -
    +
    10:00
    @@ -4586,6 +4588,38 @@ case
    +
    +

    Where to Get Help

    + +
    +
    +

    Bioinformatics Questions

    +

    For any bioinformatics specific questions feel free to reach out to +the Gladstone Bioinformatics Core.

    + +
    +
    +

    Debugging Errors

    + +
    +

    Additional Resources

    @@ -4593,15 +4627,14 @@ case

    R

    @@ -4656,8 +4689,12 @@ can continue to improve these workshops

    Single Cell ATAC-Seq Data Analysis Part 2

    diff --git a/intro-r-data-analysis/Intro_to_R_data_analysis_part_2.Rmd b/intro-r-data-analysis/Intro_to_R_data_analysis_part_2.Rmd index a950c3d..e8b5026 100644 --- a/intro-r-data-analysis/Intro_to_R_data_analysis_part_2.Rmd +++ b/intro-r-data-analysis/Intro_to_R_data_analysis_part_2.Rmd @@ -31,7 +31,7 @@ knitr::opts_chunk$set(comment = "") **Natalie Elphick** Bioinformatician I -**Michela Traglia (In Person TA)** +**Michela Traglia (Online TA)** Senior Statistician **Yihang Xin (Online TA)** @@ -43,6 +43,9 @@ Software Engineer III 2. Filtering and reformatting data 3. Plotting data 4. Hands on data analysis +5. ChatGPT tips for R +6. Where to get help + # Introduction to Tidyverse @@ -227,7 +230,6 @@ read_xlsx("Intro_to_R_workshop_materials/PanTHERIA.xlsx") |> - We will read in the data and explore if the trophic level has a significant impact on the adult body mass of mammals - Steps: 1. Combine and clean the data 2. Visualize adult body mass by trophic level @@ -260,18 +262,33 @@ Steps: - Check out the file: `example_code/1_convert_syntax_example.R` for an example use case +# Where to Get Help + +## Bioinformatics Questions + +For any bioinformatics specific questions feel free to reach out to the Gladstone Bioinformatics Core. + +- Email + - [bioinformatics@gladstone.ucsf.edu](mailto:bioinformatics@gladstone.ucsf.edu) +- Slack channel #questions-about-bioinformatics + - Contact us at the email above to be added to the channel + +## Debugging Errors + +- Try searching the web by pasting the error message and any relevant keywords (package or function name) +- Websites like [Stack Overflow](https://stackoverflow.com/) and [Posit Community Forum](https://forum.posit.co/) should have the most relevant answers +- If the problem is package specific, check the documentation and reach out to the authors using their preferred method + # Additional Resources + ## R - [R for Data Science](https://r4ds.hadley.nz/) - [Top 10 R Errors and How to Fix them](https://statsandr.com/blog/top-10-errors-in-r/) -- [R Markdown: The Definitive Guide](https://bookdown.org/yihui/rmarkdown/how-to-read-this-book.html) : Excellent R markdown reference +- [R Markdown: The Definitive Guide](https://bookdown.org/yihui/rmarkdown/how-to-read-this-book.html) - [ggplot2: elegant graphics for data analysis](https://ggplot2-book.org/) - - [Advanced R](https://adv-r.hadley.nz/) - - ## Statistics - [Data Analysis in R](https://bookdown.org/steve_midway/DAR) : This book has more statistics details than *R for Data Science* @@ -300,7 +317,9 @@ Steps: [Single Cell ATAC-Seq Data Analysis Part 2](https://gladstone.org/events/single-cell-atac-seq-data-analysis-part-2-1) -- Check [this link](https://gladstone.org/events?series=data-science-training-program) at the end of the summer for out fall workshop schedule +- Check [this link](https://gladstone.org/events?series=data-science-training-program) at the end of the summer for out fall workshop schedule + +- [Gladstone Bioinformatics Workshops](https://github.com/gladstone-institutes/Bioinformatics-Workshops/wiki) - workshop wiki page for all of the workshops we offer