From d3ba893028d700b570afc9af39f411d91de4aa29 Mon Sep 17 00:00:00 2001 From: Ayushi Agrawal <88406934+ayushi-agrawal-gladstone@users.noreply.github.com> Date: Wed, 13 Jul 2022 16:07:03 -0700 Subject: [PATCH] Update README.md --- intro-rna-seq/README.md | 18 +++++++++--------- 1 file changed, 9 insertions(+), 9 deletions(-) diff --git a/intro-rna-seq/README.md b/intro-rna-seq/README.md index 448add3..d321b56 100644 --- a/intro-rna-seq/README.md +++ b/intro-rna-seq/README.md @@ -2,12 +2,12 @@ [Link to wiki page](https://github.com/gladstone-institutes/Bioinformatics-Workshops/wiki/Introduction-to-RNA-Seq-Analysis) ### Description of files -1. Single_read.fastq (fastq file with a single read to understand the fastq file format) -2. Bacteria_GATTACA_L001_R1_001.fastq (single-end small practice data with 100k reads for the demo in the workshop) -3. Adapter_Sequence.fasta (fasta file with adapter sequence for demo with cutadapt) -4. rDNA_sequence.fasta (fasta file with the reference genome sequence for demo with STAR aligner) -5. rDNA.gtf (GTF file with the annotations for demo with featureCounts) -6. all_steps_wynton.sh (shell script for running all the analysis steps on UCSF Wynton command-line interface using the practice data provided) -7. steps_on_wynton_session1.txt (text file with steps used on wynton to download/uplaod files, change directories etc in session 1) -8. steps_on_wynton_session2.txt (text file with steps used on wynton to download/uplaod files, change directories etc in session 2) -9. all_steps_docker_desktop.sh (shell script for running all the analysis steps using Docker Desktop and the practice data provided) +- Single_read.fastq (fastq file with a single read to understand the fastq file format) +- Bacteria_GATTACA_L001_R1_001.fastq (single-end small practice data with 100k reads for the demo in the workshop) +- Adapter_Sequence.fasta (fasta file with adapter sequence for demo with cutadapt) +- rDNA_sequence.fasta (fasta file with the reference genome sequence for demo with STAR aligner) +- rDNA.gtf (GTF file with the annotations for demo with featureCounts) +- all_steps_wynton.sh (shell script for running all the analysis steps on UCSF Wynton command-line interface using the practice data provided) +- steps_on_wynton_session1.txt (text file with steps used on wynton to download/uplaod files, change directories etc in session 1) +- steps_on_wynton_session2.txt (text file with steps used on wynton to download/uplaod files, change directories etc in session 2) +- all_steps_docker_desktop.sh (shell script for running all the analysis steps using Docker Desktop and the practice data provided)