##login to a dev node on Wynton

##On wynton create directory in the space you can run analyses on - You can change to whichever location on your account
mkdir /gladstone/bioinformatics/projects/scatac_workshop

##move into this directory
cd /gladstone/bioinformatics/projects/scatac_workshop

##copy arrow files for the demo to the directory that you just created


##download the singularity container
singularity pull docker://ruben6um/scatac_workshop_demo_2

##give the container access to the relevant directory 
dataDir=/gladstone/bioinformatics/projects/scatac_workshop/
export APPTAINER_BINDPATH="$dataDir"

##get the workshop data
wget https://www.dropbox.com/s/4d4heooz0u9p721/hands-on.zip

##unzip workshop data
unzip hands-on.zip

##move to the workshop directory
cd hands-on

##launch the container
singularity exec $dataDir/scatac_workshop_demo_2_latest.sif R

##sequentially copy paste lines of code to run  in ArchR_demo_2_analysis.Rmd in the R session