#Read table. library(gplots) dat <- read.table("norm_counts.txt", sep = "\t", header = T) dat <- as.matrix(dat) #Save in pdf format. pdf("Heatmap.pdf", width = 10, height = 10) heatmap.2(dat, dendrogram = "column") #Use labRow = "" to turn off row labels. dev.off() #Save in TIFF format. tiff("Heatmap.tiff", width = 10, height = 10, units = 'in', res = 300) heatmap.2(dat, dendrogram = "column") #Use labRow = "" to turn off row labels. dev.off()