mirror of
https://github.com/gladstone-institutes/Bioinformatics-Workshops.git
synced 2025-11-30 09:45:43 -08:00
26 lines
964 B
Docker
26 lines
964 B
Docker
# Docker inheritance
|
|
FROM rocker/verse
|
|
|
|
RUN R -e 'install.packages("BiocManager")'
|
|
# Install required Bioconductor package
|
|
RUN R -e 'install.packages("batchtools")'
|
|
RUN R -e 'install.packages("tidyverse")'
|
|
RUN R -e 'install.packages("rSEA")'
|
|
RUN R -e 'install.packages("statmod")'
|
|
# Install required Bioconductor package
|
|
RUN R -e 'BiocManager::install("clusterProfiler")'
|
|
RUN R -e 'BiocManager::install("EnrichmentBrowser")'
|
|
RUN R -e 'BiocManager::install("GSEABenchmarkeR")'
|
|
RUN R -e 'BiocManager::install("org.Hs.eg.db")'
|
|
RUN R -e 'BiocManager::install("GEOquery")'
|
|
RUN R -e 'BiocManager::install("GO.db")'
|
|
RUN R -e 'BiocManager::install("edgeR")'
|
|
RUN R -e 'BiocManager::install("DESeq2")'
|
|
RUN R -e 'BiocManager::install("genefilter")'
|
|
RUN R -e 'BiocManager::install("geneplotter")'
|
|
RUN R -e 'BiocManager::install("ExperimentHub")'
|
|
RUN R -e 'BiocManager::install("GSEABase")'
|
|
RUN R -e 'BiocManager::install("PADOG")'
|
|
RUN R -e 'BiocManager::install("biomaRt")'
|
|
|
|
|