mirror of
https://github.com/gladstone-institutes/Bioinformatics-Workshops.git
synced 2025-11-30 09:45:43 -08:00
23 lines
761 B
Text
23 lines
761 B
Text
##login to a dev node on Wynton
|
|
|
|
##On wynton create directory in the space you can run analyses on - You can change to whichever location on your account
|
|
mkdir /gladstone/bioinformatics/projects/scatac_workshop
|
|
|
|
##move into this directory
|
|
cd /gladstone/bioinformatics/projects/scatac_workshop
|
|
|
|
##copy arrow files for the demo
|
|
???
|
|
|
|
##download the singularity container
|
|
singularity pull docker://ruben6um/scatac_workshop_demo_2
|
|
|
|
##give the container access to the relevant directory
|
|
dataDir=/gladstone/bioinformatics/projects/scatac_workshop/
|
|
export APPTAINER_BINDPATH="$dataDir"
|
|
|
|
##launch the container
|
|
singularity exec $dataDir/scatac_workshop_demo_2_latest.sif R
|
|
|
|
##sequentially copy paste lines of code to run in ArchR_demo_2_analysis.Rmd in the R session
|
|
|