From 9c72e400ba368863506df9c31384f68813a43ae5 Mon Sep 17 00:00:00 2001
From: veghp <31794642+veghp@users.noreply.github.com>
Date: Tue, 10 Sep 2019 12:37:40 +0100
Subject: [PATCH] Get correct DM1-3 coordinates

Original version took DM0-2.
---
 pipelines/92_pseudotime_webportal/pseudotime_webportal.R | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pipelines/92_pseudotime_webportal/pseudotime_webportal.R b/pipelines/92_pseudotime_webportal/pseudotime_webportal.R
index dce9876..c8c1fef 100755
--- a/pipelines/92_pseudotime_webportal/pseudotime_webportal.R
+++ b/pipelines/92_pseudotime_webportal/pseudotime_webportal.R
@@ -205,7 +205,7 @@ raw_data_genes = t(apply(raw_data_genes, 1, adaptive.moving_average, kernel = 15
 by.pdt.order = order(pseudotime$Pseudotime)
 
 dm.df = read.csv(file.path(output_folder_material, "dm.csv"), row.names = 1, header = F)
-dm.df = as.data.frame(dm.df[, 1:3])
+dm.df = as.data.frame(dm.df[, 2:4])
 
 dm.df$Labels = factor(seurat.obj@ident, levels = cell.labels)
 dm.df$Colours = mapvalues(x = dm.df$Labels, from = cell.labels, to = cell.colours)