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dchakro 2020-12-16 19:38:29 +02:00
parent db75cd3575
commit 03836a5c29
8 changed files with 50 additions and 42 deletions
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1
CT_GA_count.R
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@ -8,6 +8,7 @@ CT_GA_count <- function(SampleID,Ref_Base,Alt_Base){
# # Copyright 2020, Deepankar Chakroborty, All rights reserved. # # Copyright 2020, Deepankar Chakroborty, All rights reserved.
# # # #
# # Author : Deepankar Chakroborty (https://github.com/dchakro) # # Author : Deepankar Chakroborty (https://github.com/dchakro)
# # Website: https://www.dchakro.com
# # Report issues: https://github.com/dchakro/shared_Rscripts/issues # # Report issues: https://github.com/dchakro/shared_Rscripts/issues
# # License: https://github.com/dchakro/shared_Rscripts/blob/master/LICENSE # # License: https://github.com/dchakro/shared_Rscripts/blob/master/LICENSE
# #<----------------------------> # #<---------------------------->

1
IsolateCanonicalVariant.R
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@ -12,6 +12,7 @@ IsolateCanonicalVariant <- function (AAchangeAnnotations){
# # Copyright 2020, Deepankar Chakroborty, All rights reserved. # # Copyright 2020, Deepankar Chakroborty, All rights reserved.
# # # #
# # Author : Deepankar Chakroborty (https://github.com/dchakro) # # Author : Deepankar Chakroborty (https://github.com/dchakro)
# # Website: https://www.dchakro.com
# # Report issues: https://github.com/dchakro/shared_Rscripts/issues # # Report issues: https://github.com/dchakro/shared_Rscripts/issues
# # License: https://github.com/dchakro/shared_Rscripts/blob/master/LICENSE # # License: https://github.com/dchakro/shared_Rscripts/blob/master/LICENSE
# #<----------------------------> # #<---------------------------->

1
MutResidueFind.R
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@ -12,6 +12,7 @@ MutResidueFind <- function(MutationColumn){
# # Copyright 2020, Deepankar Chakroborty, All rights reserved. # # Copyright 2020, Deepankar Chakroborty, All rights reserved.
# # # #
# # Author : Deepankar Chakroborty (https://github.com/dchakro) # # Author : Deepankar Chakroborty (https://github.com/dchakro)
# # Website: https://www.dchakro.com
# # Report issues: https://github.com/dchakro/shared_Rscripts/issues # # Report issues: https://github.com/dchakro/shared_Rscripts/issues
# # License: https://github.com/dchakro/shared_Rscripts/blob/master/LICENSE # # License: https://github.com/dchakro/shared_Rscripts/blob/master/LICENSE
# #<----------------------------> # #<---------------------------->

1
MutSiteFind.R
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@ -12,6 +12,7 @@ MutSiteFind <- function(MutationColumn){
# # Copyright 2020, Deepankar Chakroborty, All rights reserved. # # Copyright 2020, Deepankar Chakroborty, All rights reserved.
# # # #
# # Author : Deepankar Chakroborty (https://github.com/dchakro) # # Author : Deepankar Chakroborty (https://github.com/dchakro)
# # Website: https://www.dchakro.com
# # Report issues: https://github.com/dchakro/shared_Rscripts/issues # # Report issues: https://github.com/dchakro/shared_Rscripts/issues
# # License: https://github.com/dchakro/shared_Rscripts/blob/master/LICENSE # # License: https://github.com/dchakro/shared_Rscripts/blob/master/LICENSE
# #<----------------------------> # #<---------------------------->

1
ggplotBreaks.R
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@ -6,6 +6,7 @@ ggplotBreaks <- function(range,tick,skip.steps=0){
# # Copyright 2020, Deepankar Chakroborty, All rights reserved. # # Copyright 2020, Deepankar Chakroborty, All rights reserved.
# # # #
# # Author : Deepankar Chakroborty (https://github.com/dchakro) # # Author : Deepankar Chakroborty (https://github.com/dchakro)
# # Website: https://www.dchakro.com
# # Report issues: https://github.com/dchakro/shared_Rscripts/issues # # Report issues: https://github.com/dchakro/shared_Rscripts/issues
# # License: https://github.com/dchakro/shared_Rscripts/blob/master/LICENSE # # License: https://github.com/dchakro/shared_Rscripts/blob/master/LICENSE
# #<----------------------------> # #<---------------------------->

1
roundUp.R
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@ -8,6 +8,7 @@ roundUp <- function(x,to=10)
# # Author : Deepankar Chakroborty (https://github.com/dchakro) # # Author : Deepankar Chakroborty (https://github.com/dchakro)
# # Report issues: https://github.com/dchakro/shared_Rscripts/issues # # Report issues: https://github.com/dchakro/shared_Rscripts/issues
# # Website: https://www.dchakro.com
# # License: https://github.com/dchakro/shared_Rscripts/blob/master/LICENSE # # License: https://github.com/dchakro/shared_Rscripts/blob/master/LICENSE
# # Adapted from: https://stackoverflow.com/a/44691056 # # Adapted from: https://stackoverflow.com/a/44691056

1
summarySE.R
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@ -12,6 +12,7 @@ summarySE <- function(data=NULL, measurevar=NULL, statistic="mean", groupvars=NU
# # Copyright 2018, Deepankar Chakroborty, All rights reserved. # # Copyright 2018, Deepankar Chakroborty, All rights reserved.
# # Author : Deepankar Chakroborty (https://github.com/dchakro) # # Author : Deepankar Chakroborty (https://github.com/dchakro)
# # Website: https://www.dchakro.com
# # Report issues: https://github.com/dchakro/shared_Rscripts/issues # # Report issues: https://github.com/dchakro/shared_Rscripts/issues
# # License: https://github.com/dchakro/shared_Rscripts/blob/master/LICENSE # # License: https://github.com/dchakro/shared_Rscripts/blob/master/LICENSE

1
unparalogMutations.R
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@ -12,6 +12,7 @@ unparalog <- function(DATA, paralog_separator = ";", annotation_separator = ",",
# # Copyright 2020, Deepankar Chakroborty, All rights reserved. # # Copyright 2020, Deepankar Chakroborty, All rights reserved.
# # # #
# # Author : Deepankar Chakroborty (https://github.com/dchakro) # # Author : Deepankar Chakroborty (https://github.com/dchakro)
# # Website: https://www.dchakro.com
# # Report issues: https://github.com/dchakro/shared_Rscripts/issues # # Report issues: https://github.com/dchakro/shared_Rscripts/issues
# # License: https://github.com/dchakro/shared_Rscripts/blob/master/LICENSE # # License: https://github.com/dchakro/shared_Rscripts/blob/master/LICENSE
# #<----------------------------> # #<---------------------------->