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Deepankar Chakroborty 2020-07-29 13:12:05 +03:00
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unparalogMutations.R
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# #<---------------------------->
# # Author : Deepankar Chakroborty
# # URL: https://gitlab.utu.fi/deecha
# # Please include this when distributing and/or using this code.
# # I hope you will read and respect the terms of the included LICENSE
# #
# # Author : Deepankar Chakroborty (https://gitlab.utu.fi/deecha)
# # Report issues: https://gitlab.utu.fi/deecha/shared_scripts/-/issues
# # Please include this when distributing my code.
# # License: https://gitlab.utu.fi/deecha/shared_scripts/-/blob/master/LICENSE
# #
# # PURPOSE:
# # In the gene column in your SNV annotation if you see something like:
# # e.g. PRAMEF7;PRAMEF8 OR PRAMEF7,PRAMEF8
# # then your mutations annotations have gene paralogs.
# #
# # This script aims to de-couple those paralogs into individual their rows.
# #
# #<---------------------------->
# ------------------------
### Info:
### Info on what to pass as the function parameters:
# Assign correct paralog_separator found in the gene column of your SNV annotations # e.g. if the Gene column has entries like PRAMEF7;PRAMEF8
# then the paralog_separator is ";"
# or set it to whatever separator is used by your SNV annotation software.