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- add IsolateCanonicalVariant.R
- remove variables used to check and install dependencies
This commit is contained in:
Deepankar Chakroborty 2020-07-29 15:00:48 +03:00
parent b35647d0df
commit a1a6dd9dcf
3 changed files with 77 additions and 1 deletions
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3
unparalogMutations.R
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@ -33,6 +33,7 @@
dependencies <- c("stringi", "progress")
missing_packages <- dependencies[!(dependencies %in% installed.packages()[, "Package"])]
if(length(missing_packages)) install.packages(missing_packages)
rm(missing_packages,dependencies)
unparalog <- function(DATA, paralog_separator = ";", annotation_separator = ",", GeneColName , AnnotationColName ){
# Sanity checks
@ -51,7 +52,7 @@ unparalog <- function(DATA, paralog_separator = ";", annotation_separator = ",",
stop("Inconsistencies with these input parameters.\n Ensure they are correct and try again.")
}
# Cleanup
rm(missing_packages,dependencies,check_paralog_sep,check_annotation_sep)
rm(check_paralog_sep,check_annotation_sep)
gc()
current.idx <- 1 # nrow(DATA)+1