diff --git a/parse_IUPAC_AAchange.R b/parse_IUPAC_AAchange.R index f644edf..8f67d51 100644 --- a/parse_IUPAC_AAchange.R +++ b/parse_IUPAC_AAchange.R @@ -33,6 +33,6 @@ parse_IUPAC_AAchange <- function(MutationColumn){ AAPos <- stringi::stri_extract_first_regex(str = MutationColumn,pattern = "[0-9]+") REF_AA <- stringi::stri_extract_first_regex(str = MutationColumn,pattern = "[ACDEFGHIKLMNPQRSTVWYX]+") ALT_AA <- stringi::stri_extract_last_regex(str = MutationColumn,pattern = "[ACDEFGHIKLMNPQRSTVWYX]+") - return(data.frame(REF_AA,as.numeric(AAPos),ALT_AA)) + return(data.frame(REF_AA,AAPos=as.numeric(AAPos),ALT_AA)) } \ No newline at end of file