# #<----------------------------> # # Please include this section when distributing and/or using this code. # # Please read and abide by the terms of the included LICENSE # # # # Author : Deepankar Chakroborty (https://gitlab.utu.fi/deecha) # # Report issues: https://gitlab.utu.fi/deecha/shared_scripts/-/issues # # License: https://gitlab.utu.fi/deecha/shared_scripts/-/blob/master/LICENSE # # # # PURPOSE: # # For a given vector of amino acid changes like A123T, V256F, E746_A750del # # this function returns c(123, 256, 746) as amino acid positions of # # the mutated residue. # # In case of indels, it doesn't return the range!! (returns only the start position) # # # #<----------------------------> dependencies <- c("stringi") missing_packages <- dependencies[!(dependencies %in% installed.packages()[, "Package"])] if(length(missing_packages)) install.packages(missing_packages) MutSiteFind <- function(MutationColumn){ return(unlist(x = stringi::stri_extract_first_regex(str = MutationColumn,pattern = "[[:digit:]]+"), use.names = F)) }