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a1a6dd9dcf
- add IsolateCanonicalVariant.R - remove variables used to check and install dependencies
26 lines
1.1 KiB
R
26 lines
1.1 KiB
R
# #<---------------------------->
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# # Please include this section when distributing and/or using this code.
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# # Please read and abide by the terms of the included LICENSE
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# #
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# # Author : Deepankar Chakroborty (https://gitlab.utu.fi/deecha)
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# # Report issues: https://gitlab.utu.fi/deecha/shared_scripts/-/issues
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# # License: https://gitlab.utu.fi/deecha/shared_scripts/-/blob/master/LICENSE
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# #
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# # PURPOSE:
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# # For a given vector of amino acid changes like A123T, V256F, E746_A750del
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# # this function returns c(123, 256, 746) as amino acid positions of
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# # the mutated residue.
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# # In case of indels, it doesn't return the range!! (returns only the start position)
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# #
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# #<---------------------------->
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dependencies <- c("stringi")
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missing_packages <- dependencies[!(dependencies %in% installed.packages()[, "Package"])]
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if(length(missing_packages)) install.packages(missing_packages)
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rm(missing_packages,dependencies)
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MutSiteFind <- function(MutationColumn){
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return(unlist(x = stringi::stri_extract_first_regex(str = MutationColumn,pattern = "[[:digit:]]+"), use.names = F))
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}
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