Buck9195/Gladstone-Bioinformatics-Workshop
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add instructions for getting the data on wynton

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Natalie Elphick 2023-02-08 19:03:37 -08:00 • committed by GitHub
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intro-sc-atac-seq/wynton_launch_instructions.txt
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@ -16,6 +16,15 @@ singularity pull docker://ruben6um/scatac_workshop_demo_2
dataDir=/gladstone/bioinformatics/projects/scatac_workshop/
export APPTAINER_BINDPATH="$dataDir"
##get the workshop data
wget https://www.dropbox.com/s/4d4heooz0u9p721/hands-on.zip
##unzip workshop data
unzip hands-on.zip
##move to the workshop directory
cd hands-on
##launch the container
singularity exec $dataDir/scatac_workshop_demo_2_latest.sif R