Buck9195/Gladstone-Bioinformatics-Workshop
1
0
Fork 0
mirror of https://github.com/gladstone-institutes/Bioinformatics-Workshops.git synced 2025-11-30 09:45:43 -08:00
Code Issues Projects Releases Packages Wiki Activity Actions

add a where to get help section

Browse source
This commit is contained in:
Natalie Elphick 2024-05-21 10:39:57 -07:00
parent fa6170941f
commit b8f6c7163a
2 changed files with 76 additions and 20 deletions
Download patch file Download diff file Expand all files Collapse all files

33
intro-r-data-analysis/Intro_to_R_data_analysis_part_2.Rmd
View file

@ -31,7 +31,7 @@ knitr::opts_chunk$set(comment = "")
**Natalie Elphick**
Bioinformatician I
**Michela Traglia (In Person TA)**
**Michela Traglia (Online TA)**
Senior Statistician
**Yihang Xin (Online TA)**
@ -43,6 +43,9 @@ Software Engineer III
2. Filtering and reformatting data
3. Plotting data
4. Hands on data analysis
5. ChatGPT tips for R
6. Where to get help
# Introduction to Tidyverse
@ -227,7 +230,6 @@ read_xlsx("Intro_to_R_workshop_materials/PanTHERIA.xlsx") |>
- We will read in the data and explore if the trophic level has a significant impact on the adult body mass of mammals
Steps:
1. Combine and clean the data
2. Visualize adult body mass by trophic level
@ -260,18 +262,33 @@ Steps:
- Check out the file: `example_code/1_convert_syntax_example.R` for an example use case
# Where to Get Help
## Bioinformatics Questions
For any bioinformatics specific questions feel free to reach out to the Gladstone Bioinformatics Core.
- Email
- [bioinformatics@gladstone.ucsf.edu](mailto:bioinformatics@gladstone.ucsf.edu)
- Slack channel #questions-about-bioinformatics
- Contact us at the email above to be added to the channel
## Debugging Errors
- Try searching the web by pasting the error message and any relevant keywords (package or function name)
- Websites like [Stack Overflow](https://stackoverflow.com/) and [Posit Community Forum](https://forum.posit.co/) should have the most relevant answers
- If the problem is package specific, check the documentation and reach out to the authors using their preferred method
# Additional Resources
## R
- [R for Data Science](https://r4ds.hadley.nz/)
- [Top 10 R Errors and How to Fix them](https://statsandr.com/blog/top-10-errors-in-r/)
- [R Markdown: The Definitive Guide](https://bookdown.org/yihui/rmarkdown/how-to-read-this-book.html) : Excellent R markdown reference
- [R Markdown: The Definitive Guide](https://bookdown.org/yihui/rmarkdown/how-to-read-this-book.html)
- [ggplot2: elegant graphics for data analysis](https://ggplot2-book.org/)
- [Advanced R](https://adv-r.hadley.nz/)
## Statistics
- [Data Analysis in R](https://bookdown.org/steve_midway/DAR) : This book has more statistics details than *R for Data Science*
@ -300,7 +317,9 @@ Steps:
[Single Cell ATAC-Seq Data Analysis Part 2](https://gladstone.org/events/single-cell-atac-seq-data-analysis-part-2-1)
- Check [this link](https://gladstone.org/events?series=data-science-training-program) at the end of the summer for out fall workshop schedule
- Check [this link](https://gladstone.org/events?series=data-science-training-program) at the end of the summer for out fall workshop schedule
- [Gladstone Bioinformatics Workshops](https://github.com/gladstone-institutes/Bioinformatics-Workshops/wiki) - workshop wiki page for all of the workshops we offer