add a where to get help section

docs/Intro_to_R_data_analysis_part_2.html

@@ -2809,7 +2809,7 @@ border: 0;
 <h1>Introductions</h1>
 <p><strong>Natalie Elphick</strong><br />
 Bioinformatician I</p>
-<p><strong>Michela Traglia (In Person TA)</strong><br />
+<p><strong>Michela Traglia (Online TA)</strong><br />
 Senior Statistician</p>
 <p><strong>Yihang Xin (Online TA)</strong><br />
 Software Engineer III</p>
@@ -2822,6 +2822,8 @@ Software Engineer III</p>
 <li>Filtering and reformatting data</li>
 <li>Plotting data</li>
 <li>Hands on data analysis</li>
+<li>ChatGPT tips for R</li>
+<li>Where to get help</li>
 </ol>
 </section>
 
@@ -3046,7 +3048,7 @@ modified by adding layers</li>
 <section id="min-break" class="title-slide slide level1">
 <h1>10 min break</h1>
 <center>
-<div class="countdown" id="timer_4ff84877" data-update-every="1" tabindex="0" style="right:0;bottom:0;margin:5%;padding:50px;font-size:5em;position: relative; width: min-content;">
+<div class="countdown" id="timer_c802e9da" data-update-every="1" tabindex="0" style="right:0;bottom:0;margin:5%;padding:50px;font-size:5em;position: relative; width: min-content;">
 <div class="countdown-controls"><button class="countdown-bump-down">−</button><button class="countdown-bump-up">+</button></div>
 <code class="countdown-time"><span class="countdown-digits minutes">10</span><span class="countdown-digits colon">:</span><span class="countdown-digits seconds">00</span></code>
 </div>
@@ -4586,6 +4588,38 @@ case</li>
 </ul>
 </section></section>
 <section>
+<section id="where-to-get-help" class="title-slide slide level1">
+<h1>Where to Get Help</h1>
+
+</section>
+<section id="bioinformatics-questions" class="slide level2">
+<h2>Bioinformatics Questions</h2>
+<p>For any bioinformatics specific questions feel free to reach out to
+the Gladstone Bioinformatics Core.</p>
+<ul>
+<li>Email
+<ul>
+<li><a href="mailto:bioinformatics@gladstone.ucsf.edu">bioinformatics@gladstone.ucsf.edu</a></li>
+</ul></li>
+<li>Slack channel #questions-about-bioinformatics
+<ul>
+<li>Contact us at the email above to be added to the channel</li>
+</ul></li>
+</ul>
+</section>
+<section id="debugging-errors" class="slide level2">
+<h2>Debugging Errors</h2>
+<ul>
+<li>Try searching the web by pasting the error message and any relevant
+keywords (package or function name)</li>
+<li>Websites like <a href="https://stackoverflow.com/">Stack
+Overflow</a> and <a href="https://forum.posit.co/">Posit Community
+Forum</a> should have the most relevant answers</li>
+<li>If the problem is package specific, check the documentation and
+reach out to the authors using their preferred method</li>
+</ul>
+</section></section>
+<section>
 <section id="additional-resources" class="title-slide slide level1">
 <h1>Additional Resources</h1>
 
@@ -4593,15 +4627,14 @@ case</li>
 <section id="r" class="slide level2">
 <h2>R</h2>
 <ul>
-<li><p><a href="https://r4ds.hadley.nz/">R for Data Science</a></p></li>
+<li><a href="https://r4ds.hadley.nz/">R for Data Science</a></li>
-<li><p><a href="https://statsandr.com/blog/top-10-errors-in-r/">Top 10 R
+<li><a href="https://statsandr.com/blog/top-10-errors-in-r/">Top 10 R
-Errors and How to Fix them</a></p></li>
+Errors and How to Fix them</a></li>
-<li><p><a href="https://bookdown.org/yihui/rmarkdown/how-to-read-this-book.html">R
+<li><a href="https://bookdown.org/yihui/rmarkdown/how-to-read-this-book.html">R
-Markdown: The Definitive Guide</a> : Excellent R markdown
+Markdown: The Definitive Guide</a></li>
-reference</p></li>
+<li><a href="https://ggplot2-book.org/">ggplot2: elegant graphics for
-<li><p><a href="https://ggplot2-book.org/">ggplot2: elegant graphics for
+data analysis</a></li>
-data analysis</a></p></li>
+<li><a href="https://adv-r.hadley.nz/">Advanced R</a></li>
-<li><p><a href="https://adv-r.hadley.nz/">Advanced R</a></p></li>
 </ul>
 </section>
 <section id="statistics" class="slide level2">
@@ -4656,8 +4689,12 @@ can continue to improve these workshops</li>
 <p><a href="https://gladstone.org/events/single-cell-atac-seq-data-analysis-part-2-1">Single
 Cell ATAC-Seq Data Analysis Part 2</a></p>
 <ul>
-<li>Check <a href="https://gladstone.org/events?series=data-science-training-program">this
+<li><p>Check <a href="https://gladstone.org/events?series=data-science-training-program">this
-link</a> at the end of the summer for out fall workshop schedule</li>
+link</a> at the end of the summer for out fall workshop
+schedule</p></li>
+<li><p><a href="https://github.com/gladstone-institutes/Bioinformatics-Workshops/wiki">Gladstone
+Bioinformatics Workshops</a> - workshop wiki page for all of the
+workshops we offer</p></li>
 </ul>
 </section></section>
     </div>

intro-r-data-analysis/Intro_to_R_data_analysis_part_2.Rmd

@@ -31,7 +31,7 @@ knitr::opts_chunk$set(comment = "")
 **Natalie Elphick**    
 Bioinformatician I  
 
-**Michela Traglia (In Person TA)**    
+**Michela Traglia (Online TA)**    
 Senior Statistician
 
 **Yihang Xin (Online TA)**     
@@ -43,6 +43,9 @@ Software Engineer III
 2. Filtering and reformatting data
 3. Plotting data
 4. Hands on data analysis
+5. ChatGPT tips for R
+6. Where to get help
+
 
 # Introduction to Tidyverse
 
@@ -227,7 +230,6 @@ read_xlsx("Intro_to_R_workshop_materials/PanTHERIA.xlsx") |>
 
 -   We will read in the data and explore if the trophic level has a significant impact on the adult body mass of mammals  
 
-
 Steps:    
 1.    Combine and clean the data   
 2.    Visualize adult body mass by trophic level  
@@ -260,18 +262,33 @@ Steps:
 -   Check out the file: `example_code/1_convert_syntax_example.R` for an example use case
 
 
+# Where to Get Help
+
+## Bioinformatics Questions
+
+For any bioinformatics specific questions feel free to reach out to the Gladstone Bioinformatics Core.
+
+-   Email
+    -   [bioinformatics@gladstone.ucsf.edu](mailto:bioinformatics@gladstone.ucsf.edu)
+-   Slack channel #questions-about-bioinformatics
+    -   Contact us at the email above to be added to the channel
+
+## Debugging Errors
+
+-   Try searching the web by pasting the error message and any relevant keywords (package or function name)
+-   Websites like [Stack Overflow](https://stackoverflow.com/) and [Posit Community Forum](https://forum.posit.co/) should have the most relevant answers
+-   If the problem is package specific, check the documentation and reach out to the authors using their preferred method 
+
 # Additional Resources
 
+
 ## R
 -   [R for Data Science](https://r4ds.hadley.nz/)
 -   [Top 10 R Errors and How to Fix them](https://statsandr.com/blog/top-10-errors-in-r/)
--   [R Markdown: The Definitive Guide](https://bookdown.org/yihui/rmarkdown/how-to-read-this-book.html) : Excellent R markdown reference
+-   [R Markdown: The Definitive Guide](https://bookdown.org/yihui/rmarkdown/how-to-read-this-book.html)
 -   [ggplot2: elegant graphics for data analysis](https://ggplot2-book.org/)
-
 -   [Advanced R](https://adv-r.hadley.nz/)
 
-
-
 ## Statistics
 
 -   [Data Analysis in R](https://bookdown.org/steve_midway/DAR) : This book has more statistics details than *R for Data Science*
@@ -300,7 +317,9 @@ Steps:
 
 [Single Cell ATAC-Seq Data Analysis Part 2](https://gladstone.org/events/single-cell-atac-seq-data-analysis-part-2-1)
 
-- Check [this link](https://gladstone.org/events?series=data-science-training-program) at the end of the summer for out fall workshop schedule
+-   Check [this link](https://gladstone.org/events?series=data-science-training-program) at the end of the summer for out fall workshop schedule
+
+-   [Gladstone Bioinformatics Workshops](https://github.com/gladstone-institutes/Bioinformatics-Workshops/wiki) - workshop wiki page for all of the workshops we offer