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32 lines
970 B
Text
32 lines
970 B
Text
##login to a dev node on Wynton
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##On wynton create directory in the space you can run analyses on - You can change to whichever location on your account
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mkdir /gladstone/bioinformatics/projects/scatac_workshop
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##move into this directory
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cd /gladstone/bioinformatics/projects/scatac_workshop
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##copy arrow files for the demo to the directory that you just created
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##download the singularity container
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singularity pull docker://ruben6um/scatac_workshop_demo_2
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##give the container access to the relevant directory
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dataDir=/gladstone/bioinformatics/projects/scatac_workshop/
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export APPTAINER_BINDPATH="$dataDir"
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##get the workshop data
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wget https://www.dropbox.com/s/4d4heooz0u9p721/hands-on.zip
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##unzip workshop data
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unzip hands-on.zip
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##move to the workshop directory
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cd hands-on
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##launch the container
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singularity exec $dataDir/scatac_workshop_demo_2_latest.sif R
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##sequentially copy paste lines of code to run in ArchR_demo_2_analysis.Rmd in the R session
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